Publications Scientifiques

M. Potters, T. Vaillant, F. Bouchet, Sampling microcanonical measures of the 2D Euler equations using Creutz’s algorithm: a phase transition from disorder to order when energy is increased, in press J. Stat. Mech. 2013

M. Champion, A. Alastuey, T. Dauxois an S. Ruffo, Gravitation in the microcanonical ensemble: Appropriate scaling leading to extensivity and thermalization, submitted to J. Stat. Phys. (2012), arXiv:1210.5592.

Everaers, Ralf,Topological versus rheological entanglement length in primitive-path analysis protocols, tube models, and slip-link models, PHYSICAL REVIEW E Volume: 86 Issue: 2 Article Number: 022801 DOI: 10.1103/PhysRevE.86.022801 Part 1, August 13, 2012

Gupta, Shamik; Potters, Max; Ruffo, Stefano, One-dimensional lattice of oscillators coupled through power-law interactions: Continuum limit and dynamics of spatial Fourier modes, PHYSICAL REVIEW E Volume: 85 Issue: 6 Article Number: 066201 DOI: 10.1103/PhysRevE.85.066201 Part 2, June 4, 2012

Bouchet, Freddy; Venaille, Antoine, Statistical mechanics of two-dimensional and geophysical flows, PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS Volume: 515 Issue: 5 Pages: 227-295 DOI: 10.1016/j.physrep.2012.02.001, June 2012

de Buyl, Pierre; Fanelli, Duccio; Ruffo, Stefano, Phase transitions of quasistationary states in the Hamiltonian Mean Field model, CENTRAL EUROPEAN JOURNAL OF PHYSICS Volume: 10 Issue: 3 Pages: 652-659 DOI: 10.2478/s11534-012-0010-6, June 2012

Magi, Alberto; Tattini, Lorenzo; Benelli, Matteo; et al., WNP: a novel algorithm for gene products annotation from weighted functional networks, PloS one Volume: 7 Issue: 6 Pages: e38767 DOI: 10.1371/journal.pone.0038767, (2012) Epub June 28, 2012

Bouchet, Freddy; Touchette, Hugo, Non-classical large deviations for a noisy system with non-isolated attractors, JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT Article Number: P05028 DOI: 10.1088/1742-5468/2012/05/P05028, May 2012

Patelli, Aurelio; Gupta, Shamik; Nardini, Cesare; et al., Linear response theory for long-range interacting systems in quasistationary states, PHYSICAL REVIEW E Volume: 85 ssue: 2 Article Number: 021133 DOI: 10.1103/PhysRevE.85.021133 Part 1, February 23, 2012

Nardini, Cesare; Gupta, Shamik; Ruffo, Stefano; et al., Kinetic theory for non-equilibrium stationary states in long-range interacting systems, JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT Article Number: L01002 DOI: 10.1088/1742-5468/2012/01/L01002, January 2012

Everaers, Ralf; Rosa, Angelo Multi-scale modeling of diffusion-controlled reactions in polymers: Renormalisation of reactivity parameters, JOURNAL OF CHEMICAL PHYSICS Volume: 136 Issue: 1 Article Number: 014902 DOI: 10.1063/1.3673444, January 7, 2012

Cesare Nardini, Shamik Gupta, Stefano Ruffo, Thierry Dauxois, Freddy Bouchet, Kinetic theory of nonequilibrium stochastic long-range systems: Phase transition and bistability, J. Stat. Mech. Theory Exp. P12010 (2012)

S. Gupta, A. Campa and S. Ruffo, Overdamped dynamics of long-range systems on a one-dimensional lattice: Dominance of the mean-field mode and phase transition, Phys. Rev. E, 86, 061130 (2012).

Nadiga, Balasubramanya T.; Bouchet, Freddy, The equivalence of the Lagrangian-averaged Navier-Stokes-alpha model and the rational large eddy simulation model in two dimensions, PHYSICS OF FLUIDS Volume: 23 Issue: 9 Article Number: 095105 DOI: 10.1063/1.3632084, September 2011

Venaille, Antoine; Bouchet, Freddy, Solvable Phase Diagrams and Ensemble Inequivalence for Two-Dimensional and Geophysical Turbulent Flows, JOURNAL OF STATISTICAL PHYSICS Volume: 143 Issue: 2 Pages: 346-380 DOI: 10.1007/s10955-011-0168-0, April 2011

Venaille, Antoine; Bouchet, Freddy, Are oceanic rings and jets statistical equilibrium states ?, Bajer, K; Kopec, J; Kursa, M; et al., 13th European Turbulence Conference (ETC) Location: Univ Warsaw, Warsaw, POLAND Date: September 12-15, 2011, 13TH EUROPEAN TURBULENCE CONFERENCE (ETC13): GEOPHYSICAL AND MAGNETOHYDRODYNAMIC TURBULENCE Book Series: Journal of Physics Conference Series Volume: 318 Article Number: 072024 DOI: 10.1088/1742-6596/318/7/072024 (2011)

Meyer, Sam; Becker, Nils B.; Syed, Sajad Hussain; et al., From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem, NUCLEIC ACIDS RESEARCH Volume: 39 Issue: 21 Pages: 9139-9154 DOI: 10.1093/nar/gkr573, November 2011

Jost, Daniel; Zubair, Asif; Everaers, Ralf, Bubble statistics and positioning in superhelically stressed DNA, Physical Review E, Volume 84, Issue 3, Article Number 031912, DOI: 10.1103/PhysRevE.84.031912, Part 1, September 12 2011

Volk R.; Calzavarini E.; Lévêque E.; et al., Dynamics of inertial particles in a turbulent von Karman flow, JOURNAL OF FLUID MECHANICS Volume: 668 Pages: 223-235 DOI: 10.1017/S0022112010005690 (2011)

Salort J; Roche PE; and E. Lévêque, Mesoscale equipartition of kinetic energy in quantum turbulence, EPL Volume: 94 Issue: 2 Article Number: 24001 (2011)

Vosskuhle, Michel; Pumir, Alain; Leveque, Emmanuel, Estimating the Collision Rate of Inertial Particles in a Turbulent Flow: Limitations of the "Ghost Collision" Approximation, Conference: 13th European Turbulence Conference (ETC) Location: Univ Warsaw, Warsaw, Poland, September 12-15, 2011 - Journal of Physics Conference Series Volume: 318, Article Number: 052024, DOI: 10.1088/1742-6596/318/5/052024, 2011

Bouchet, Freddy; Gupta, Shamik; Mukamel, David, Thermodynamics and dynamics of systems with long-range interactions, 12th International Summer School on Fundamental Problems in Statistical Physics Location: European Ctr Foresta, Leuven, BELGIUM, August 31-September 11, 2009 - PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS Volume: 389 Issue: 20 Special Issue: SI Pages: 4389-4405 DOI: 10.1016/j.physa.2010.02.024, October 15, 2010

Bouchet, Freddy; Corvellec, Marianne, Invariant measures of the 2D Euler and Vlasov equations, JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT Article Number: P08021 DOI: 10.1088/1742-5468/2010/08/P08021, August 2010

Bouchet, Freddy; Morita, Hidetoshi, Large time behavior and asymptotic stability of the 2D Euler and linearized Euler equations, PHYSICA D-NONLINEAR PHENOMENA Volume: 239 Issue: 12 Pages: 948-966 DOI: 10.1016/j.physd.2010.01.020, June 15, 2010

Olivetti, Alain; Barre, Julien; Marcos, Bruno; et al., Breathing Dynamics for Systems of Interacting Particles in the Microcanonical and Canonical Descriptions, transport theory and Statistical Physics, Volume: 39 Issue: 5-7 Special Issue: SI Pages: 524-551 DOI: 10.1080/00411450.2011.567857 (2010)

A. Cahuzac, J. Boudet, P. Borgnat and E. Leveque Smoothing algorithms for the mean-flow extraction in large-eddy simulation of complex turbulent flows, Phys. Fluids 22, 125104, (2010)

Ji-Xuan Hou, Carsten Svaneborg, Ralf Everaers, and Gary S. Grest, Stress Relaxation in Entangled Polymer Melts, Phys. Rev. Lett. 105, 068301 (2010)

Sajad Hussain Syed, Damien Goutte-Gattat, Nils Becker, Sam Meyer, Manu Shubhdarshan Shukla, Jeffrey J. Hayes, Ralf Everaers, Dimitar Angelov, Jan Bednar, Stefan Dimitrov, Single-base resolution mapping of H1–nucleosome interactions and 3D organization of the nucleosome, Proceedings of the National Academy of Sciences, (2010)

Rosa A, Becker NB, Everaers R, Looping Probabilities in Model Interphase Chromosomes, BIOPHYSICAL JOURNAL, Volume: 98, Issue: 11, Pages: 2410-2419 (2010)

N.B. Becker, A. Rosa and R. Everaers, The radial distribution function of worm-like chains, Eur. Phys. J. E Volume 32, Number 1, May 2010

Daniel Jost and Ralf Everaers, Prediction of RNA multiloop and pseudoknot conformations from a lattice-based, coarse-grain tertiary structure model, J. Chem. Phys. 132, 095101 (2010)

A. Naso and A. Prosperetti, The interaction between a solid particle and a turbulent flow, New J. Phys. 12, 033040 (2010)

A. Naso, R. Monchaux, P.-H. Chavanis and B. Dubrulle, Statistical mechanics of Beltrami flows in axisymmetric geometry: Theory reexamined, Phys. Rev. E 81, 066318 (2010)

A. Naso, S. Thalabard, G. Collette, P.-H. Chavanis and B. Dubrulle, Statistical mechanics of Beltrami flows in axisymmetric geometry: Equilibria and bifurcations, J. Stat. Mech. P06019 (2010)

Becker, Nils B.; Everaers, Ralf, DNA nanomechanics: How proteins deform the double helix, JOURNAL OF CHEMICAL PHYSICS Volume: 130 Issue: 13 Article Number: 135102 DOI: 10.1063/1.3082157, April 7, 2009

Jost, Daniel; Everaers, Ralf, A Unified Poland-Scheraga Model of Oligo- and Polynucleotide DNA Melting: Salt Effects and Predictive Power, BIOPHYSICAL JOURNAL Volume: 96 Issue: 3 Pages: 1056-1067 DOI: 10.1529/biophysj.108.134031, February 4, 2009

Jost, Daniel; Everaers, Ralf, Genome wide application of DNA melting analysis, JOURNAL OF PHYSICS-CONDENSED MATTER Volume: 21 Issue: 3 Article Number: 034108 DOI: 10.1088/0953-8984/21/3/034108, January 21, 2009

N. B. Becker and R. Everaers Comment on "Remeasuring the Double Helix", Science 325 (5940), 538-b, (2009)

A. V. Klopper, Carsten Svaneborg and Ralf Everaers, Microphase separation in cross-linked polymer blends. Efficient replica RPA post-processing of simulation data for homopolymer networks, Eur. Phys. J. E 28, 89-96 (2009)

Nils B. Becker and Ralf Everaers, DNA nanomechanics: How proteins deform the double helix, J. Chem. Phys. 130, 135102 (2009)

Roche PE, Barenghi CF, Leveque E, Quantum turbulence at finite temperature: The two-fluids cascade, Source: EPL Volume: 87 Issue: 5 Article Number: 54006 (2009)

Calzavarini E, Volk R, Bourgoin M, Leveque E, Pinton JF, Toschi F, Acceleration statistics of finite-sized particles in turbulent flow: the role of Faxen forces, JOURNAL OF FLUID MECHANICS, Volume: 630, Pages: 179-189, (2009)

Rosa, Angelo; Everaers, Ralf,Structure and Dynamics of Interphase Chromosomes, PLOS COMPUTATIONAL BIOLOGY Volume: 4 Issue: 8 Article Number: e1000153 DOI: 10.1371/journal.pcbi.1000153, August 22, 2008

Svaneborg, Carsten; Everaers, Ralf; Grest, Gary S.; et al., Connectivity and entanglement stress contributions in strained polymer networks, MACROMOLECULES Volume: 41 Issue: 13 Pages: 4920-4928 DOI: 10.1021/ma800018f, July 8, 2008

Nariya Uchida, Gary S. Grest, and Ralf Everaers, Viscoelasticity and primitive path analysis of entangled polymer liquids: From F-actin to polyethylene, J. Chem. Phys. 128, 044902 (2008)

Pasichnyk, I.; Everaers, R.; Maggs, A. C., Simulating Van der Waals interactions in water/hydrocarbon-based complex fluids, JOURNAL OF PHYSICAL CHEMISTRY B Volume: 112 Issue: 6 Pages: 1761-1764 DOI: 10.1021/jp077401m, february 14, 2008

Uchidaa, Nariya; Grest, Gary S.; Everaers, Ralf, Viscoelasticity and primitive path analysis of entangled polymer liquids: From F-actin to polyethylene, JOURNAL OF CHEMICAL PHYSICS Volume: 128 Issue: 4 Article Number: 044902 DOI: 10.1063/1.2825597, January 28, 2008