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| - | * [[hotelprojets:accueil|Hôtel à projets]] | ||
| - | * [[hotelprojets:recherche:surplace|Projets hébergés - Équipes sur place]] | ||
| - | * [[hotelprojets:recherche:exterieurs|Projets hébergés - Équipes extérieures]] | ||
| - | * [[hotelprojets:publications|Publications]] | ||
| - | ====== Publications Scientifiques ====== | ||
| - | ==== 2013 ==== | ||
| - | * **M. Potters, T. Vaillant, F. Bouchet**, //Sampling microcanonical measures of the 2D Euler | ||
| - | equations using Creutz’s algorithm: a phase transition from disorder to order when energy is increased//, in press J. Stat. Mech. 2013 | ||
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| - | ==== 2012 ==== | ||
| - | * **M. Champion, A. Alastuey, T. Dauxois an S. Ruffo**, //[[http://arxiv.org/abs/1210.5592|Gravitation in the microcanonical ensemble: Appropriate scaling leading to extensivity and thermalization]]//, submitted to J. Stat. Phys. (2012), arXiv:1210.5592. | ||
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| - | * **Everaers, Ralf**,//[[http://pre.aps.org/abstract/PRE/v86/i2/e022801|Topological versus rheological entanglement length in primitive-path analysis protocols, tube models, and slip-link models]]//, PHYSICAL REVIEW E Volume: 86 Issue: 2 Article Number: 022801 DOI: 10.1103/PhysRevE.86.022801 Part 1, August 13, 2012 \\ | ||
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| - | * **Gupta, Shamik; Potters, Max; Ruffo, Stefano**, //One-dimensional lattice of oscillators coupled through power-law interactions: Continuum limit and dynamics of spatial Fourier modes//, PHYSICAL REVIEW E Volume: 85 Issue: 6 Article Number: 066201 DOI: 10.1103/PhysRevE.85.066201 Part 2, June 4, 2012 | ||
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| - | * **Bouchet, Freddy; Venaille, Antoine**, //[[http://www.sciencedirect.com/science/article/pii/S0370157312000518|Statistical mechanics of two-dimensional and geophysical flows]]//, PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS Volume: 515 Issue: 5 Pages: 227-295 DOI: 10.1016/j.physrep.2012.02.001, June 2012 | ||
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| - | * **de Buyl, Pierre; Fanelli, Duccio; Ruffo, Stefano**, //[[http://link.springer.com/article/10.2478%2Fs11534-012-0010-6|Phase transitions of quasistationary states in the Hamiltonian Mean Field model]]//, CENTRAL EUROPEAN JOURNAL OF PHYSICS Volume: 10 Issue: 3 Pages: 652-659 DOI: 10.2478/s11534-012-0010-6, June 2012 | ||
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| - | * **Magi, Alberto; Tattini, Lorenzo; Benelli, Matteo; et al.**, //[[http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0038767|WNP: a novel algorithm for gene products annotation from weighted functional networks]]//, PloS one Volume: 7 Issue: 6 Pages: e38767 DOI: 10.1371/journal.pone.0038767, (2012) Epub June 28, 2012 | ||
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| - | * **Bouchet, Freddy; Touchette, Hugo**, //[[http://arxiv.org/abs/1204.6269|Non-classical large deviations for a noisy system with non-isolated attractors]]//, JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT Article Number: P05028 DOI: 10.1088/1742-5468/2012/05/P05028, May 2012 | ||
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| - | * **Patelli, Aurelio; Gupta, Shamik; Nardini, Cesare; et al.**, //[[http://arxiv.org/abs/1112.1079|Linear response theory for long-range interacting systems in quasistationary states]]//, PHYSICAL REVIEW E Volume: 85 ssue: 2 Article Number: 021133 DOI: 10.1103/PhysRevE.85.021133 Part 1, February 23, 2012 | ||
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| - | * **Nardini, Cesare; Gupta, Shamik; Ruffo, Stefano; et al.**, //[[http://iopscience.iop.org/1742-5468/2012/01/L01002/|Kinetic theory for non-equilibrium stationary states in long-range interacting systems]]//, JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT Article Number: L01002 DOI: 10.1088/1742-5468/2012/01/L01002, January 2012 | ||
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| - | * **Everaers, Ralf; Rosa, Angelo** //[[http://jcp.aip.org/resource/1/jcpsa6/v136/i1/p014902_s1|Multi-scale modeling of diffusion-controlled reactions in polymers: Renormalisation of reactivity parameters]]//, JOURNAL OF CHEMICAL PHYSICS Volume: 136 Issue: 1 Article Number: 014902 DOI: 10.1063/1.3673444, January 7, 2012 \\ | ||
| - | |||
| - | * **Cesare Nardini, Shamik Gupta, Stefano Ruffo, Thierry Dauxois, Freddy Bouchet**, //[[http://arxiv.org/abs/1210.0492|Kinetic theory of nonequilibrium stochastic long-range systems: Phase transition and bistability]]//, J. Stat. Mech. Theory Exp. P12010 (2012) | ||
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| - | * **S. Gupta, A. Campa and S. Ruffo**, //[[http://pre.aps.org/abstract/PRE/v86/i6/e061130|Overdamped dynamics of long-range systems on a one-dimensional lattice: Dominance of the mean-field mode and phase transition]]//, Phys. Rev. E, 86, 061130 (2012). | ||
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| - | ==== 2011 ==== | ||
| - | * **Nadiga, Balasubramanya T.; Bouchet, Freddy**, //[[http://arxiv.org/abs/1210.1857|The equivalence of the Lagrangian-averaged Navier-Stokes-alpha model and the rational large eddy simulation model in two dimensions]]//, PHYSICS OF FLUIDS Volume: 23 Issue: 9 Article Number: 095105 DOI: 10.1063/1.3632084, September 2011 | ||
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| - | * **Venaille, Antoine; Bouchet, Freddy**, //[[http://link.springer.com/article/10.1007%2Fs10955-011-0168-0|Solvable Phase Diagrams and Ensemble Inequivalence for Two-Dimensional and Geophysical Turbulent Flows]]//, JOURNAL OF STATISTICAL PHYSICS Volume: 143 Issue: 2 Pages: 346-380 DOI: 10.1007/s10955-011-0168-0, April 2011 | ||
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| - | * **Venaille, Antoine; Bouchet, Freddy**, //[[http://iopscience.iop.org/1742-6596/318/7/072024/|Are oceanic rings and jets statistical equilibrium states ?]]//, Bajer, K; Kopec, J; Kursa, M; et al., 13th European Turbulence Conference (ETC) Location: Univ Warsaw, Warsaw, POLAND Date: September 12-15, 2011, 13TH EUROPEAN TURBULENCE CONFERENCE (ETC13): GEOPHYSICAL AND MAGNETOHYDRODYNAMIC TURBULENCE Book Series: Journal of Physics Conference Series Volume: 318 Article Number: 072024 DOI: 10.1088/1742-6596/318/7/072024 (2011) | ||
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| - | * **Meyer, Sam; Becker, Nils B.; Syed, Sajad Hussain; et al.**, //[[http://nar.oxfordjournals.org/content/39/21/9139|From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem]]//, NUCLEIC ACIDS RESEARCH Volume: 39 Issue: 21 Pages: 9139-9154 DOI: 10.1093/nar/gkr573, November 2011 | ||
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| - | * **Jost, Daniel; Zubair, Asif; Everaers, Ralf**, //[[http://arxiv.org/abs/1103.3294v2|Bubble statistics and positioning in superhelically stressed DNA]]//, Physical Review E, Volume 84, Issue 3, Article Number 031912, DOI: 10.1103/PhysRevE.84.031912, Part 1, September 12 2011 | ||
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| - | * **Volk R.; Calzavarini E.; Lévêque E.; et al.**, //[[http://arxiv.org/abs/1001.4943|Dynamics of inertial particles in a turbulent von Karman flow]]//, JOURNAL OF FLUID MECHANICS Volume: 668 Pages: 223-235 DOI: 10.1017/S0022112010005690 (2011) | ||
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| - | * **Salort J; Roche PE; and E. Lévêque**, //[[http://iopscience.iop.org/0295-5075/94/2/24001/|Mesoscale equipartition of kinetic energy in quantum turbulence]]//, EPL Volume: 94 Issue: 2 Article Number: 24001 (2011) | ||
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| - | * **Vosskuhle, Michel; Pumir, Alain; Leveque, Emmanuel**, //[[http://iopscience.iop.org/1742-6596/318/5/052024/|Estimating the Collision Rate of Inertial Particles in a Turbulent Flow: Limitations of the "Ghost Collision" Approximation]]//, Conference: 13th European Turbulence Conference (ETC) Location: Univ Warsaw, Warsaw, Poland, September 12-15, 2011 - Journal of Physics Conference Series Volume: 318, Article Number: 052024, DOI: 10.1088/1742-6596/318/5/052024, 2011 | ||
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| - | ==== 2010 ==== | ||
| - | * **Bouchet, Freddy; Gupta, Shamik; Mukamel, David**, //[[http://www.sciencedirect.com/science/article/pii/S0378437110001512|Thermodynamics and dynamics of systems with long-range interactions]]//, 12th International Summer School on Fundamental Problems in Statistical Physics Location: European Ctr Foresta, Leuven, BELGIUM, August 31-September 11, 2009 - PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS Volume: 389 Issue: 20 Special Issue: SI Pages: 4389-4405 DOI: 10.1016/j.physa.2010.02.024, October 15, 2010 | ||
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| - | * **Bouchet, Freddy; Corvellec, Marianne**, //[[http://iopscience.iop.org/1742-5468/2010/08/P08021/|Invariant measures of the 2D Euler and Vlasov equations]]//, JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT Article Number: P08021 DOI: 10.1088/1742-5468/2010/08/P08021, August 2010 | ||
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| - | * **Bouchet, Freddy; Morita, Hidetoshi**, //[[http://www.sciencedirect.com/science/article/pii/S0167278910000400|Large time behavior and asymptotic stability of the 2D Euler and linearized Euler equations]]//, PHYSICA D-NONLINEAR PHENOMENA Volume: 239 Issue: 12 Pages: 948-966 DOI: 10.1016/j.physd.2010.01.020, June 15, 2010 | ||
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| - | * **Olivetti, Alain; Barre, Julien; Marcos, Bruno; et al.**, //[[http://www.tandfonline.com/doi/full/10.1080/00411450.2011.567857|Breathing Dynamics for Systems of Interacting Particles in the Microcanonical and Canonical Descriptions, transport theory and Statistical Physics]]//, Volume: 39 Issue: 5-7 Special Issue: SI Pages: 524-551 DOI: 10.1080/00411450.2011.567857 (2010) | ||
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| - | * **A. Cahuzac, J. Boudet, P. Borgnat and E. Leveque** //[[http://pof.aip.org/resource/1/phfle6/v22/i12/p125104_s1|Smoothing algorithms for the mean-flow extraction in large-eddy simulation of complex turbulent flows]]//, Phys. Fluids 22, 125104, (2010) | ||
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| - | * **Ji-Xuan Hou, Carsten Svaneborg, Ralf Everaers, and Gary S. Grest**, //[[http://prl.aps.org/abstract/PRL/v105/i6/e068301|Stress Relaxation in Entangled Polymer Melts]]//, Phys. Rev. Lett. 105, 068301 (2010) | ||
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| - | * **Sajad Hussain Syed, Damien Goutte-Gattat, Nils Becker, Sam Meyer, Manu Shubhdarshan Shukla, Jeffrey J. Hayes, Ralf Everaers, Dimitar Angelov, Jan Bednar, Stefan Dimitrov**, //[[http://www.pnas.org/content/107/21/9620.abstract?sid=703d5b7e-aab0-4f79-a643-762ebbeb0e86|Single-base resolution mapping of H1–nucleosome interactions and 3D organization of the nucleosome]]//, Proceedings of the National Academy of Sciences, (2010) | ||
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| - | * **Rosa A, Becker NB, Everaers R**, //[[http://www.sciencedirect.com/science/article/pii/S0006349510002195|Looping Probabilities in Model Interphase Chromosomes]]//, BIOPHYSICAL JOURNAL, Volume: 98, Issue: 11, Pages: 2410-2419 (2010) | ||
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| - | * **N.B. Becker, A. Rosa and R. Everaers**, //[[http://epje.epj.org/index.php?option=com_article&access=standard&Itemid=129&url=/articles/epje/abs/2010/05/10189_2010_Article_9474/10189_2010_Article_9474.html|The radial distribution function of worm-like chains]]//, Eur. Phys. J. E Volume 32, Number 1, May 2010 | ||
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| - | * **Daniel Jost and Ralf Everaers**, //[[http://jcp.aip.org/resource/1/jcpsa6/v132/i9/p095101_s1|Prediction of RNA multiloop and pseudoknot conformations from a lattice-based, coarse-grain tertiary structure model]]//, J. Chem. Phys. 132, 095101 (2010) | ||
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| - | * **A. Naso and A. Prosperetti**, //[[http://iopscience.iop.org/1367-2630/12/3/033040|The interaction between a solid particle and a turbulent flow]]//, New J. Phys. 12, 033040 (2010) | ||
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| - | * **A. Naso, R. Monchaux, P.-H. Chavanis and B. Dubrulle**, //[[http://pre.aps.org/abstract/PRE/v81/i6/e066318|Statistical mechanics of Beltrami flows in axisymmetric geometry: Theory reexamined]]//, Phys. Rev. E 81, 066318 (2010) | ||
| - | |||
| - | * **A. Naso, S. Thalabard, G. Collette, P.-H. Chavanis and B. Dubrulle**, //[[http://iopscience.iop.org/1742-5468/2010/06/P06019|Statistical mechanics of Beltrami flows in axisymmetric geometry: Equilibria and bifurcations]]//, J. Stat. Mech. P06019 (2010) | ||
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| - | ==== 2009 ==== | ||
| - | * **Becker, Nils B.; Everaers, Ralf**, //[[http://jcp.aip.org/resource/1/jcpsa6/v130/i13/p135102_s1|DNA nanomechanics: How proteins deform the double helix]]//, JOURNAL OF CHEMICAL PHYSICS Volume: 130 Issue: 13 Article Number: 135102 DOI: 10.1063/1.3082157, April 7, 2009 | ||
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| - | * **Jost, Daniel; Everaers, Ralf**, //[[http://www.sciencedirect.com/science/article/pii/S0006349508000143|A Unified Poland-Scheraga Model of Oligo- and Polynucleotide DNA Melting: Salt Effects and Predictive Power]]//, BIOPHYSICAL JOURNAL Volume: 96 Issue: 3 Pages: 1056-1067 DOI: 10.1529/biophysj.108.134031, February 4, 2009 | ||
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| - | * **Jost, Daniel; Everaers, Ralf**, //[[http://iopscience.iop.org/0953-8984/21/3/034108/|Genome wide application of DNA melting analysis]]//, JOURNAL OF PHYSICS-CONDENSED MATTER Volume: 21 Issue: 3 Article Number: 034108 DOI: 10.1088/0953-8984/21/3/034108, January 21, 2009 | ||
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| - | * **N. B. Becker and R. Everaers** //[[http://www.sciencemag.org/content/325/5940/538.2.abstract|Comment on "Remeasuring the Double Helix"]]//, Science 325 (5940), 538-b, (2009) | ||
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| - | * **A. V. Klopper, Carsten Svaneborg and Ralf Everaers**, //[[http://epje.epj.org/index.php?option=com_article&access=standard&Itemid=129&url=/articles/epje/abs/2009/01/10189_2009_Article_9041/10189_2009_Article_9041.html|Microphase separation in cross-linked polymer blends. Efficient replica RPA post-processing of simulation data for homopolymer networks]]//, Eur. Phys. J. E 28, 89-96 (2009) | ||
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| - | * **Nils B. Becker and Ralf Everaers**, //[[http://jcp.aip.org/resource/1/jcpsa6/v130/i13/p135102_s1|DNA nanomechanics: How proteins deform the double helix]]//, J. Chem. Phys. 130, 135102 (2009) | ||
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| - | * **Roche PE, Barenghi CF, Leveque E**, //[[http://iopscience.iop.org/0295-5075/87/5/54006/|Quantum turbulence at finite temperature: The two-fluids cascade]]//, Source: EPL Volume: 87 Issue: 5 Article Number: 54006 (2009) | ||
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| - | * **Calzavarini E, Volk R, Bourgoin M, Leveque E, Pinton JF, Toschi F**, //[[http://hal.archives-ouvertes.fr/hal-00492251/|Acceleration statistics of finite-sized particles in turbulent flow: the role of Faxen forces]]//, JOURNAL OF FLUID MECHANICS, Volume: 630, Pages: 179-189, (2009) | ||
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| - | ==== 2008 ==== | ||
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| - | * **Rosa, Angelo; Everaers, Ralf**,[[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1000153|Structure and Dynamics of Interphase Chromosomes]], PLOS COMPUTATIONAL BIOLOGY Volume: 4 Issue: 8 Article Number: e1000153 DOI: 10.1371/journal.pcbi.1000153, August 22, 2008 | ||
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| - | * **Svaneborg, Carsten; Everaers, Ralf; Grest, Gary S.; et al.**, [[http://pubs.acs.org/doi/abs/10.1021/ma800018f|Connectivity and entanglement stress contributions in strained polymer networks]], MACROMOLECULES Volume: 41 Issue: 13 Pages: 4920-4928 DOI: 10.1021/ma800018f, July 8, 2008 | ||
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| - | * **Nariya Uchida, Gary S. Grest, and Ralf Everaers**, //[[http://jcp.aip.org/resource/1/jcpsa6/v128/i4/p044902_s1|Viscoelasticity and primitive path analysis of entangled polymer liquids: From F-actin to polyethylene]]//, J. Chem. Phys. 128, 044902 (2008) | ||
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| - | * **Pasichnyk, I.; Everaers, R.; Maggs, A. C.**, //[[http://pubs.acs.org/doi/abs/10.1021/jp077401m|Simulating Van der Waals interactions in water/hydrocarbon-based complex fluids]]//, JOURNAL OF PHYSICAL CHEMISTRY B Volume: 112 Issue: 6 Pages: 1761-1764 DOI: 10.1021/jp077401m, february 14, 2008 | ||
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| - | * **Uchidaa, Nariya; Grest, Gary S.; Everaers, Ralf**, //[[http://jcp.aip.org/resource/1/jcpsa6/v128/i4/p044902_s1|Viscoelasticity and primitive path analysis of entangled polymer liquids: From F-actin to polyethylene]]//, JOURNAL OF CHEMICAL PHYSICS Volume: 128 Issue: 4 Article Number: 044902 DOI: 10.1063/1.2825597, January 28, 2008 | ||